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MSc-Uni Stuttgart Biomedical NLP Seminar 2017 (Camilo Thorne)

This is an MSc-level seminar on biomedical NLP. The students are meant to choose a topic or task, read literature on the topic's or task's state of the art, and prepare both a presentation (recorded here) and a written report. Please refer to the course's main webpage on the University of Stuttgart ILIAS website to access the course's complete materials.

Intro - Biomedical NLP. The slides are here.
Intro - Biomedical NLP Resources. The slides are here.
Topic 1 - Parsing. The slides are here.
Topic 2 - Gene/Protein NER. The slides are here.
Topic 3 - Chemical NER. The slides are here.
Topic 4 - Text Mining for Clinical Text. The slides are here.
Topic 5 - PPIs. The slides are here.
Topic 7 - DDIs. The slides are here.
Topic 8 - Gene-Disease Relationships. The slides are here.
Topic 9 - Pharmacovigilance on Twitter. The slides are here.
Topic 10 - Mental Health. The slides are here and here
Topic 11 - Semantic Retrieval Tools. The slides are here.